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PS: We have more than 700 user accounts on our Limesurvey instance. Having a model of 1 separate LS instance per user is not sustainable for us.
Arggslines wrote: Increasing the php timeout didn't make a difference.
I then decided to set debug to 2 in LS's config.php, hoping to get more feedback about the problem, and after that change, the data integrity check ran and generated the results page as expected. I was also able to delete all the old tables reported, with no issues.
After that, I set debug back to 0 and tried running the integrity check again. And again the problem showed up: no results (empty page) and no errors in the browser console nor the system logs.